Information for motif9


Reverse Opposite:

p-value:1e-6
log p-value:-1.522e+01
Information Content per bp:1.764
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif54.55%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif10.22%
Average Position of motif in Targets397.9 +/- 298.4bp
Average Position of motif in Background166.6 +/- 69.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.92
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TGTTAGCC
---CAGCC

MA0117.1_Mafb/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGTTAGCC
NCGTCAGC-

PB0109.1_Bbx_2/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTAGCC----
NNNNCTGTTAACNNTNN

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TGTTAGCC-
AGGTGHCAGACA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGTTAGCC--
AGGTGNCAGACAG

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTAGCC---
NNNNTTGTGTGCTTNN

PB0059.1_Six6_1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTAGCC----
ANANNTGATACCCNATN

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAGCC--
SCTGTCARCACC

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAGCC-------
NSTGTTTRCWCAGBNNN

PB0130.1_Gm397_2/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTAGCC---
NNGCGTGTGTGCNGCN