| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-2 | -5.428e+00 | 1.0000 | 7.0 | 31.82% | 1.9 | 17.99% | motif file (matrix) | |
| 2 | | HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer | 1e-2 | -5.093e+00 | 1.0000 | 10.0 | 45.45% | 2.6 | 24.57% | motif file (matrix) |