Information for motif1


Reverse Opposite:

p-value:1e-53
log p-value:-1.229e+02
Information Content per bp:1.732
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif2.24%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets379.5 +/- 247.6bp
Average Position of motif in Background491.6 +/- 86.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0042.1_FOXI1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AAATAAATCCAC
AAACAAACANNC

PB0116.1_Elf3_2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AAATAAATCCAC
GTTCAAAAAAAAAATTC

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------AAATAAATCCAC
TACTGGAAAAAAAA----

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAATAAATCCAC--
GAAAAAATTGCAAGG

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AAATAAATCCAC---
---SSAATCCACANN

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AAATAAATCCAC---
NNNAATTAATCCCCNCN

PB0182.1_Srf_2/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AAATAAATCCAC
GTTAAAAAAAAAAATTA

PB0017.1_Foxj3_1/Jaspar

Match Rank:8
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------AAATAAATCCAC
AAAAAGTAAACAAACAC--

MA0485.1_Hoxc9/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAATAAATCCAC
GGCCATAAATCAC-

PB0186.1_Tcf3_2/Jaspar

Match Rank:10
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AAATAAATCCAC
AGCCGAAAAAAAAAT---