Information for motif19


Reverse Opposite:

p-value:1e-28
log p-value:-6.468e+01
Information Content per bp:1.716
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets414.6 +/- 359.2bp
Average Position of motif in Background560.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GGAAAAAAATGG
TACTGGAAAAAAAA--

MA0515.1_Sox6/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GGAAAAAAATGG
--AAAACAATGG

PB0182.1_Srf_2/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGAAAAAAATGG--
GTTAAAAAAAAAAATTA

MA0095.2_YY1/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GGAAAAAAATGG----
----CAAGATGGCGGC

MA0152.1_NFATC2/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGAAAAAAATGG
TGGAAAA------

PB0186.1_Tcf3_2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GGAAAAAAATGG
AGCCGAAAAAAAAAT-

MA0077.1_SOX9/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGAAAAAAATGG
---GAACAATGG

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GGAAAAAAATGG----
-GAAAAAATTGCAAGG

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGAAAAAAATGG-
---GAACAATGGN

MA0143.3_Sox2/Jaspar

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGAAAAAAATGG
----AACAAAGG