Information for motif20


Reverse Opposite:

p-value:1e-27
log p-value:-6.431e+01
Information Content per bp:1.693
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets384.1 +/- 278.4bp
Average Position of motif in Background466.2 +/- 324.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGAAAAGACAGG
AGAAACGAAAGT

MA0037.2_GATA3/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGAAAAGACAGG
AGATAAGA----

MA0482.1_Gata4/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGAAAAGACAGG
NNGAGATAAGA----

MA0035.3_Gata1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGAAAAGACAGG
ANAGATAAGAA---

MA0029.1_Mecom/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGAAAAGACAGG-
AAGATAAGATAACA

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGAAAAGACAGG
NAGATAAGNN---

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGAAAAGACAGG
CAGATAAGGN---

PB0021.1_Gata3_1/Jaspar

Match Rank:8
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------AGAAAAGACAGG---
TTTTTAGAGATAAGAAATAAAG

MA0514.1_Sox3/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGAAAAGACAGG
--AAAACAAAGG

MA0481.1_FOXP1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGAAAAGACAGG
CAAAAGTAAACAAAG-