Information for motif21


Reverse Opposite:

p-value:1e-26
log p-value:-6.202e+01
Information Content per bp:1.821
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets487.3 +/- 403.2bp
Average Position of motif in Background195.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCGCCGCG
GCTCCG--

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCGCCGCG
AGCGCGCC---

PB0113.1_E2F3_2/Jaspar

Match Rank:3
Score:0.71
Offset:-7
Orientation:reverse strand
Alignment:-------GCGCCGCG--
NNNNTTGGCGCCGANNN

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------GCGCCGCG--
NNNNTTGGCGCCGANNN

Sp1(Zf)/Promoter/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCGCCGCG---
GGCCCCGCCCCC

PB0199.1_Zfp161_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCGCCGCG---
GCCGCGCAGTGCGT

PB0052.1_Plagl1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------GCGCCGCG--
TTGGGGGCGCCCCTAG

PB0179.1_Sp100_2/Jaspar

Match Rank:8
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------GCGCCGCG
NNTTTANNCGACGNA

PB0008.1_E2F2_1/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCCGCG--
NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCCGCG--
ANCGCGCGCCCTTNN