Information for motif22


Reverse Opposite:

p-value:1e-26
log p-value:-6.106e+01
Information Content per bp:1.530
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets379.6 +/- 315.9bp
Average Position of motif in Background339.5 +/- 296.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGGCTTTACG------
ANNTTTTACGACNTNN

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTTTACG------
NNNATTTTACGACNNTN

PH0047.1_Hoxa11/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGCTTTACG------
NNGTTTTACGACTTTA

PH0067.1_Hoxc12/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTTTACG------
GNNNTTTTACGACCTNA

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGGCTTTACG------
NNNTTTTACGACNTTN

PH0076.1_Hoxd11/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTTTACG------
ANNATTTTACGACNTNA

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGCTTTACG------
ANATTTTACGAGNNNN

MA0164.1_Nr2e3/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGCTTTACG
CAAGCTT----

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGGCTTTACG
CNAGGCCT----

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGGCTTTACG------
NAATTTTACGAGNTNN