Information for motif24


Reverse Opposite:

p-value:1e-25
log p-value:-5.973e+01
Information Content per bp:1.784
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif2.40%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets343.2 +/- 290.2bp
Average Position of motif in Background561.7 +/- 397.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0597.1_THAP1/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGSCCWCCTTG
CTGCCCGCA---

MA0112.2_ESR1/Jaspar

Match Rank:2
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CTGSCCWCCTTG----
GGCCCAGGTCACCCTGACCT

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CTGSCCWCCTTG
GGGTGTGCCCAAAAGG

MA0072.1_RORA_2/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGSCCWCCTTG--
TTGACCTANTTATN

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CTGSCCWCCTTG-
ACTATGCCAACCTACC

MA0071.1_RORA_1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTGSCCWCCTTG
-TGACCTTGAT-

PB0107.1_Ascl2_2/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CTGSCCWCCTTG--
CTATCCCCGCCCTATT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CTGSCCWCCTTG
-TGACCT-----

VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CTGSCCWCCTTG------
NNNTGAACTCNNTGACCTCN

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:10
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CTGSCCWCCTTG--
CATAAGACCACCATTAC