Information for motif27


Reverse Opposite:

p-value:1e-24
log p-value:-5.669e+01
Information Content per bp:1.530
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets397.6 +/- 315.1bp
Average Position of motif in Background142.2 +/- 64.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TCATTTATATGA
NNNNNNCTTTTATAN--

MA0108.2_TBP/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TCATTTATATGA
NNNNNNCTTTTATAN--

PH0150.1_Pou4f3/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TCATTTATATGA
GACNTCATTAATAANN

PB0080.1_Tbp_1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCATTTATATGA---
TCTTTATATATAAATA

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TCATTTATATGA
NNCATTCATTCATNNN-

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCATTTATATGA-----
-NAATTTTACGAGNTNN

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCATTTATATGA--
ACATTCATGACACG

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TCATTTATATGA-
GACCACATTCATACAAT

MA0507.1_POU2F2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCATTTATATGA
TTCATTTGCATAT

MA0594.1_Hoxa9/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCATTTATATGA
TGATTTATGGC-