Information for motif30


Reverse Opposite:

p-value:1e-23
log p-value:-5.440e+01
Information Content per bp:1.729
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets430.8 +/- 330.2bp
Average Position of motif in Background426.6 +/- 334.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGTTTCAAGCA
CGGTTTCAAA--

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGTTTCAAGCA----
GAAGATCAATCACTAA

PB0144.1_Lef1_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGTTTCAAGCA----
GAAGATCAATCACTTA

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGTTTCAAGCA
TGGTTTCAGT--

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CAGTTTCAAGCA--
GACCACATTCATACAAT

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAGTTTCAAGCA-
---TBGCACGCAA

MA0069.1_Pax6/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CAGTTTCAAGCA------
----TTCACGCATGAGTT

MA0144.2_STAT3/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CAGTTTCAAGCA-
--TTTCCCAGAAN

MA0070.1_PBX1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CAGTTTCAAGCA--
--CCATCAATCAAA

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAGTTTCAAGCA-----
NANTTTCAAGTGGTTAN