Information for motif33


Reverse Opposite:

p-value:1e-22
log p-value:-5.222e+01
Information Content per bp:1.815
Number of Target Sequences with motif842.0
Percentage of Target Sequences with motif33.72%
Number of Background Sequences with motif243.7
Percentage of Background Sequences with motif24.91%
Average Position of motif in Targets413.3 +/- 337.8bp
Average Position of motif in Background399.4 +/- 302.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------AGTAGCCA--
ATGTACAGTAGCAAAG

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------AGTAGCCA--
ATTTACAGTAGCAAAA

PB0154.1_Osr1_2/Jaspar

Match Rank:3
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------AGTAGCCA--
NNNTTAGGTAGCNTNT

PB0155.1_Osr2_2/Jaspar

Match Rank:4
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------AGTAGCCA--
NNTGTAGGTAGCANNT

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGTAGCCA---
CTGTTGCTAGGS

MA0510.1_RFX5/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGTAGCCA-----
NCTGTTGCCAGGGAG

MA0509.1_Rfx1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGTAGCCA-------
-GTTGCCATGGNAAC

MA0161.1_NFIC/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGTAGCCA-
---TGCCAA

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGTAGCCA-----
NNCGTTGCTATGGNN

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGTAGCCA
NGAAGC--