Information for motif37


Reverse Opposite:

p-value:1e-21
log p-value:-4.915e+01
Information Content per bp:1.740
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets416.9 +/- 336.0bp
Average Position of motif in Background980.2 +/- 205.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------CTGACAGAMT
NNNTGAGTGACAGCT-

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTGACAGAMT
AGGTGHCAGACA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGACAGAMT
CCAGACAG---

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTGACAGAMT-
AGGTGNCAGACAG

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CTGACAGAMT
TGAGTGACAGSC-

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTGACAGAMT
GGTGYTGACAGS--

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTGACAGAMT
--CACAGN--

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTGACAGAMT---
ACTATGAATGAATGAT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGACAGAMT
CCAGACRSVB-

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTGACAGAMT---
GATATTGACAGCTGCGT