Information for motif38


Reverse Opposite:

p-value:1e-20
log p-value:-4.824e+01
Information Content per bp:1.530
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets442.6 +/- 279.1bp
Average Position of motif in Background478.5 +/- 150.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0015.1_Crx/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GAGAATCCGC----
AGGCTAATCCCCAANG

PH0126.1_Obox6/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAGAATCCGC----
CNATAATCCGNTTNT

PB0139.1_Irf5_2/Jaspar

Match Rank:3
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GAGAATCCGC
TTGACCGAGAATTCC-

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAGAATCCGC---
-SSAATCCACANN

NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GAGAATCCGC
GGGGGAATCCCC

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------GAGAATCCGC
GNNACCGAGAATNNN-

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GAGAATCCGC--
GNNAGCTAATCCCCCN

MA0479.1_FOXH1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGAATCCGC-
TCCAATCCACA

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAGAATCCGC---
AATCGTTAATCCCTTTA

PB0203.1_Zfp691_2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAGAATCCGC----
TACGAGACTCCTCTAAC