Information for motif41


Reverse Opposite:

p-value:1e-18
log p-value:-4.242e+01
Information Content per bp:1.852
Number of Target Sequences with motif77.0
Percentage of Target Sequences with motif3.08%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets418.1 +/- 270.6bp
Average Position of motif in Background284.3 +/- 174.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GACTGCGT
-GCTGTG-

POL002.1_INR/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GACTGCGT
NNNANTGA--

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GACTGCGT-
---TGCGTG

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GACTGCGT----
AATCGCACTGCATTCCG

MA0090.1_TEAD1/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GACTGCGT
CNGAGGAATGTG-

MA0100.2_Myb/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GACTGCGT
CCAACTGCCA

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GACTGCGT
CCAACTGCCA

PB0149.1_Myb_2/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GACTGCGT---
CGACCAACTGCCATGC

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GACTGCGT
VBSYGTCTGG--

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GACTGCGT--
NNTCCTGCTGTGNNN