Information for motif48


Reverse Opposite:

p-value:1e-15
log p-value:-3.654e+01
Information Content per bp:1.530
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets378.7 +/- 356.4bp
Average Position of motif in Background192.4 +/- 127.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TGCAAGAC-
AGGTGHCAGACA

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TGCAAGAC-
AGATGCAATCCC

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TGCAAGAC--
AGGTGNCAGACAG

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TGCAAGAC-
ATGCCAGACN

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGCAAGAC-
TTGCAACATN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TGCAAGAC--
--CCAGACAG

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGCAAGAC------
CAAATCCAGACATCACA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGCAAGAC----
--CCAGACRSVB

MA0133.1_BRCA1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGCAAGAC
-ACAACAC

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGCAAGAC---
CAATTGCAAAAATAT