Information for motif52


Reverse Opposite:

p-value:1e-12
log p-value:-2.838e+01
Information Content per bp:1.530
Number of Target Sequences with motif86.0
Percentage of Target Sequences with motif3.44%
Number of Background Sequences with motif14.5
Percentage of Background Sequences with motif1.48%
Average Position of motif in Targets438.3 +/- 328.3bp
Average Position of motif in Background482.2 +/- 397.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CTCAATCT----
GAAGATCAATCACTAA

MA0070.1_PBX1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTCAATCT--
CCATCAATCAAA

MA0038.1_Gfi1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTCAATCT---
-CAAATCACTG

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTCAATCT----
GAAGATCAATCACTTA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCAATCT-
GYCATCMATCAT

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCAATCT------
CGACCCAATCAACGGTG

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTCAATCT
TCATCAATCA

POL002.1_INR/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTCAATCT-
-TCAGTCTT

MA0594.1_Hoxa9/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTCAATCT
GCCATAAATCA

PH0152.1_Pou6f1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CTCAATCT----
GCAACCTCATTATNNNN