Information for motif6


Reverse Opposite:

p-value:1e-40
log p-value:-9.393e+01
Information Content per bp:1.746
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif2.36%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets453.8 +/- 374.1bp
Average Position of motif in Background402.7 +/- 340.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGTCCCTTGG--
NGTCCCNNGGGA

MA0143.3_Sox2/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGTCCCTTGG-
---CCTTTGTT

MA0484.1_HNF4G/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGTCCCTTGG-----
TGGACTTTGNNCTCN

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGTCCCTTGG-
---CCWTTGTY

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGTCCCTTGG---
NTGCCCANNGGTNA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGTCCCTTGG
CTGACCTTTG-

MA0154.2_EBF1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGTCCCTTGG---
--TCCCTGGGGAN

MA0114.2_HNF4A/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTCCCTTGG----
CTGGACTTTGGACTC

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGTCCCTTGG----
--TCCCCTGGGGAC

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGTCCCTTGG------
TGGACTTTGNNCTNTG