Information for motif8


Reverse Opposite:

p-value:1e-38
log p-value:-8.901e+01
Information Content per bp:1.852
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets469.8 +/- 328.1bp
Average Position of motif in Background425.4 +/- 175.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CATCGAATCC
--GCTAATCC

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CATCGAATCC-
AGATGCAATCCC

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CATCGAATCC-----
NANANTTAATCCCNNNN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CATCGAATCC--
----TAATCCCN

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATCGAATCC-----
GATAATTAATCCCTCTT

PB0185.1_Tcf1_2/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CATCGAATCC------
--NNTAATCCNGNCNN

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CATCGAATCC----
GNNAGCTAATCCCCCN

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CATCGAATCC-----
---SSAATCCACANN

MA0467.1_Crx/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CATCGAATCC----
---CTAATCCTCTT

MA0479.1_FOXH1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CATCGAATCC---
--TCCAATCCACA