Information for motif1


Reverse Opposite:

p-value:1e-23
log p-value:-5.389e+01
Information Content per bp:1.854
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets261.6 +/- 175.0bp
Average Position of motif in Background267.8 +/- 161.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CAGAGAGCTGGC
--AACAGCTG--

MA0521.1_Tcf12/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CAGAGAGCTGGC-
--AACAGCTGCAG

MA0500.1_Myog/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CAGAGAGCTGGC-
--GACAGCTGCAG

MA0461.1_Atoh1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CAGAGAGCTGGC
----CAGATGGC

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGAGAGCTGGC
-NAHCAGCTGD-

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAGAGAGCTGGC
--AACAGATGGC

MA0499.1_Myod1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGAGCTGGC
NGNGACAGCTGCN

PH0140.1_Pknox1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGAGAGCTGGC-----
-AAAGACCTGTCAATCC

E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGAGAGCTGGC
-NNACAGCTGC-

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGAGAGCTGGC
-BAACAGCTGT-