Information for motif10


Reverse Opposite:

p-value:1e-13
log p-value:-3.173e+01
Information Content per bp:1.924
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif22.0
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets509.4 +/- 399.8bp
Average Position of motif in Background614.3 +/- 551.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0078.1_Sox17/Jaspar

Match Rank:1
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:CAGAGACAAT---
----GACAATGNN

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAGAGACAAT-----
CTCACACAATGGCGC

MA0515.1_Sox6/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CAGAGACAAT--
--AAAACAATGG

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAGAGACAAT--
--RNAACAATGG

MA0084.1_SRY/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CAGAGACAAT
-GTAAACAAT

PB0177.1_Sox7_2/Jaspar

Match Rank:6
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------CAGAGACAAT------
NNCNNNCNCANACAATTAGNAC

MA0087.1_Sox5/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAGAGACAAT
---NAACAAT

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGAGACAAT-----
TCACGGAACAATAGGTG

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CAGAGACAAT
----AACAAT

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGACAAT------
TNCNNAACAATTTTTNC