Information for motif12


Reverse Opposite:

p-value:1e-12
log p-value:-2.871e+01
Information Content per bp:1.585
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets356.9 +/- 308.9bp
Average Position of motif in Background453.3 +/- 310.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0175.1_Vax2/Jaspar

Match Rank:1
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TGGCCCTAATTA------
--GNCTTAATTAGTGNNN

PH0039.1_Mnx1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TGGCCCTAATTA----
NNNCACTAATTANTNN

PB0031.1_Hoxa3_1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGGCCCTAATTA--
TGGAGGTAATTAAC

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:4
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:TGGCCCTAATTA
----NCTAATTA

PH0062.1_Hoxb7/Jaspar

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGGCCCTAATTA----
TNNCATTAATTANTNC

PH0050.1_Hoxa3/Jaspar

Match Rank:6
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGGCCCTAATTA--
TTGAGGTAATTAGT

PH0160.1_Shox2/Jaspar

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGGCCCTAATTA------
-CGCGTTAATTAATTGTG

PH0055.1_Hoxa7_2/Jaspar

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGGCCCTAATTA----
TNCCATTAATTACTNC

PH0028.1_En1/Jaspar

Match Rank:9
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TGGCCCTAATTA------
--GNATTAATTAGTTNNC

PH0159.1_Rhox6/Jaspar

Match Rank:10
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TGGCCCTAATTA------
-TGCCTTAATTAATGCTC