Information for motif13


Reverse Opposite:

p-value:1e-12
log p-value:-2.841e+01
Information Content per bp:1.895
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets337.2 +/- 188.2bp
Average Position of motif in Background470.4 +/- 280.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0033.1_Irf3_1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGAACGGCAA---
GAGAACCGAAACTG

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGAACGGCAA
--AACCGANA

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGAACGGCAA--
--AATGGAAAAT

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TGAACGGCAA----
---AAGGCAAGTGT

BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGAACGGCAA
NHAACBGYYV

MA0597.1_THAP1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGAACGGCAA
-TNNGGGCAG

PB0032.1_IRC900814_1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGAACGGCAA-----
ATTTACGACAAATAGC

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TGAACGGCAA
---ACGTCA-

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGAACGGCAA
GTTAATGGCC-

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGAACGGCAA-
NTGATTGACAGN