Information for motif19


Reverse Opposite:

p-value:1e-11
log p-value:-2.656e+01
Information Content per bp:1.530
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets344.6 +/- 280.3bp
Average Position of motif in Background543.1 +/- 161.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0112.1_Nkx2-3/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----AGTACTTATTGA
CTTTAAGTACTTAATG-

MA0124.1_NKX3-1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGTACTTATTGA
-ATACTTA----

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------AGTACTTATTGA
NATTTAAGTACTTANNA-

PB0197.1_Zfp105_2/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGTACTTATTGA-----
NAAANTTATTGAANCAN

PH0062.1_Hoxb7/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGTACTTATTGA--
GTAGTAATTAATGCAA

PH0039.1_Mnx1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGTACTTATTGA--
GTACTAATTAGTGGCG

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGTACTTATTGA-----
-NNANTGATTGATNNNN

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGTACTTATTGA
AAGCACTTAA---

PH0008.1_Barx2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGTACTTATTGA--
TAAGTAATTAGTTATA

PH0055.1_Hoxa7_2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGTACTTATTGA--
GTAGTAATTAATGGAA