Information for motif23


Reverse Opposite:

p-value:1e-10
log p-value:-2.335e+01
Information Content per bp:1.756
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets418.2 +/- 299.1bp
Average Position of motif in Background546.0 +/- 203.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGCCAYTGTCTA--
NNNCCATTGTGTNAN

MA0515.1_Sox6/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGCCAYTGTCTA
--CCATTGTTTT

MA0078.1_Sox17/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGCCAYTGTCTA
-CTCATTGTC--

FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAYTGTCTA
NAGGTCANTGACCT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGCCAYTGTCTA
--CCWTTGTY--

MA0143.3_Sox2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGCCAYTGTCTA
--CCTTTGTT--

MA0442.1_SOX10/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGCCAYTGTCTA
---CTTTGT---

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGCCAYTGTCTA--
TGTTCCCATTGTGTACT

MA0113.2_NR3C1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGCCAYTGTCTA--
AGNACATTNTGTTCT

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGCCAYTGTCTA
GGAAATTCCC--