Information for motif24


Reverse Opposite:

p-value:1e-10
log p-value:-2.333e+01
Information Content per bp:1.592
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets325.9 +/- 247.5bp
Average Position of motif in Background597.7 +/- 297.1bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AACAGGGTGTAC--
GVACAGNMTGTYCTB

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AACAGGGTGTAC--
AGNACAGNCTGTTCTN

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AACAGGGTGTAC--
GRACAGWMTGTYCTB

MA0113.2_NR3C1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AACAGGGTGTAC-
AGAACAGAATGTTCT

MA0007.2_AR/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AACAGGGTGTAC
AAGAACAGAATGTTC

GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AACAGGGTGTAC--
AGNACANNNTGTNCTN

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AACAGGGTGTAC
AACAGGAAGT--

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AACAGGGTGTAC
ANCAGGATGT--

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AACAGGGTGTAC
CACAGN------

MA0493.1_Klf1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AACAGGGTGTAC--
---TGGGTGTGGCN