Information for motif26


Reverse Opposite:

p-value:1e-9
log p-value:-2.091e+01
Information Content per bp:1.981
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets331.6 +/- 283.5bp
Average Position of motif in Background282.8 +/- 192.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TTGAGTGCAG
CTTGAGTGGCT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TTGAGTGCAG
TTGAGTGSTT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTGAGTGCAG
CTYRAGTGSY-

MA0122.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TTGAGTGCAG
TTAAGTGGA-

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTGAGTGCAG
TTAAGTGCTT

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTGAGTGCAG--
NNNNTTGTGTGCTTNN

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTGAGTGCAG--
CCATTGTATGCAAAT

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTGAGTGCAG
TTGCGTGCVA

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTGAGTGCAG-----
NTNTATGTGCACATNNN

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTGAGTGCAG-------
NNNANTGCAGTGCNNTT