Information for motif28


Reverse Opposite:

p-value:1e-8
log p-value:-1.872e+01
Information Content per bp:1.790
Number of Target Sequences with motif151.0
Percentage of Target Sequences with motif6.04%
Number of Background Sequences with motif149.1
Percentage of Background Sequences with motif3.70%
Average Position of motif in Targets360.5 +/- 323.0bp
Average Position of motif in Background460.8 +/- 342.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGTACGGW-
CTGTTCCTGG

PB0115.1_Ehf_2/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGTACGGW-------
AAGATCGGAANTNNNA

PB0173.1_Sox21_2/Jaspar

Match Rank:3
Score:0.51
Offset:-7
Orientation:forward strand
Alignment:-------TGTACGGW--
AATCAATTGTTCCGCTA

MA0007.2_AR/Jaspar

Match Rank:4
Score:0.51
Offset:-8
Orientation:reverse strand
Alignment:--------TGTACGGW
GNACANNNTGTTCTT-

PB0075.1_Sp100_1/Jaspar

Match Rank:5
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGTACGGW----
ATTTTACGGAAAAT

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TGTACGGW----
--RCCGGAARYN

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:7
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------TGTACGGW--
NNANTGGTGGTCTTNNN

Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:TGTACGGW----
--RCCGGAAGTD

BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TGTACGGW---
-BRRCVGTTDN

PB0096.1_Zfp187_1/Jaspar

Match Rank:10
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---TGTACGGW---
TTATGTACTAATAA