Information for motif29


Reverse Opposite:

p-value:1e-8
log p-value:-1.855e+01
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets286.4 +/- 201.3bp
Average Position of motif in Background198.9 +/- 123.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0058.2_MAX/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AATCTCATGG
AAGCACATGG

MA0147.2_Myc/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AATCTCATGG
AAGCACATGG

MA0038.1_Gfi1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AATCTCATGG
CAAATCACTG--

MA0526.1_USF2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AATCTCATGG-
GGTCACATGAC

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AATCTCATGG-
-GTCACGTGGT

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AATCTCATGG-
-GTCACGTGGM

PH0056.1_Hoxa9/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AATCTCATGG----
ANTAATTTTATGGCCGN

MA0093.2_USF1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AATCTCATGG-
GGTCACGTGGC

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AATCTCATGG
---GTCATN-

PB0169.1_Sox15_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AATCTCATGG--
TNGAATTTCATTNAN