Information for motif30


Reverse Opposite:

p-value:1e-8
log p-value:-1.848e+01
Information Content per bp:1.530
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets312.9 +/- 181.8bp
Average Position of motif in Background561.3 +/- 203.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0507.1_POU2F2/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TCCATTTGCA---
TTCATTTGCATAT

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.74
Offset:3
Orientation:forward strand
Alignment:TCCATTTGCA---
---ATTTGCATAA

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:TCCATTTGCA---
---ATTTGCATAT

PH0144.1_Pou2f2/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TCCATTTGCA-----
TNTAATTTGCATANNN

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TCCATTTGCA-----
TNTAATTTGCATACNA

MA0058.2_MAX/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCCATTTGCA-
-CCATGTGCTT

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TCCATTTGCA--------
---ATTTGCATAACAATG

MA0147.2_Myc/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TCCATTTGCA-
-CCATGTGCTT

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCCATTTGCA
RCCATMTGTT

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TCCATTTGCA--------
---ATTTGCATAACAAAG