Information for motif33


Reverse Opposite:

p-value:1e-7
log p-value:-1.824e+01
Information Content per bp:1.947
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets256.2 +/- 239.3bp
Average Position of motif in Background360.5 +/- 253.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.79
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0461.1_Atoh1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGGCTGGCCG
CAGATGGC--

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGGCTGGCCG
-NGCTN----

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CGGCTGGCCG
NAHCAGCTGD---

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CGGCTGGCCG
CAGCAGCTGN---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGGCTGGCCG
CTGTCTGG---

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CGGCTGGCCG
VNAVCAGCTGGC--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGGCTGGCCG
VBSYGTCTGG---

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGGCTGGCCG
AACAGATGGC--

MA0161.1_NFIC/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CGGCTGGCCG
---TTGGCA-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGGCTGGCCG
TWGTCTGV---