Information for motif37


Reverse Opposite:

p-value:1e-7
log p-value:-1.711e+01
Information Content per bp:1.530
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets391.4 +/- 285.4bp
Average Position of motif in Background398.6 +/- 326.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CGTAATGA
GKTAATGR

PH0152.1_Pou6f1_2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CGTAATGA------
AAACATAATGAGGTTGC

PH0151.1_Pou6f1_1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CGTAATGA------
GACGATAATGAGCTTGC

PH0061.1_Hoxb6/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CGTAATGA------
NNNGTAATTACNNATA

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CGTAATGA--
--TAATTAGN

PH0072.1_Hoxc8/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CGTAATGA----
TTGGGGTAATTAACGT

PH0055.1_Hoxa7_2/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGTAATGA------
GTAGTAATTAATGGAA

PH0175.1_Vax2/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CGTAATGA------
GNCTTAATTAGTGNNN

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CGTAATGA---
-YTAATTAVHT

MA0132.1_Pdx1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGTAATGA
-CTAATT-