Information for motif39


Reverse Opposite:

p-value:1e-7
log p-value:-1.660e+01
Information Content per bp:1.530
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets375.9 +/- 204.8bp
Average Position of motif in Background673.2 +/- 212.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0029.1_Mecom/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TAACTTGTCCTG
TNTTATCTTATCTT-

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TAACTTGTCCTG
GANGTTAACTAGTTTNN

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------TAACTTGTCCTG
AGCTGTTAACTAGCCGT-

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TAACTTGTCCTG--
AAAATTGTTATGAA

PH0107.1_Msx2/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TAACTTGTCCTG
ANCGCTAATTGGTCTNN

PB0032.1_IRC900814_1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TAACTTGTCCTG---
GNNATTTGTCGTAANN

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TAACTTGTCCTG--
GGAAAAATTGTTAGGAA

MA0109.1_Hltf/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TAACTTGTCCTG
AACCTTATAT--

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TAACTTGTCCTG
-----TGACCT-

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TAACTTGTCCTG
NNACTTGCCTT-