Information for motif4


Reverse Opposite:

p-value:1e-18
log p-value:-4.250e+01
Information Content per bp:1.711
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets368.6 +/- 288.5bp
Average Position of motif in Background481.2 +/- 148.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0123.1_Foxl1_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCTTTTGTTGGA----
NNTTTTGTTTTGATNT

PB0116.1_Elf3_2/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GCTTTTGTTGGA--
GNATTTTTTTTTTGANC

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GCTTTTGTTGGA--
TNNTCCTTTGTTCTNNT

MF0011.1_HMG_class/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GCTTTTGTTGGA
---ATTGTT---

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCTTTTGTTGGA
-CCATTGTTNY-

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCTTTTGTTGGA
-CCWTTGTY---

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTTGTTGGA--
NNANTTTTATTGGNNN

MA0514.1_Sox3/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCTTTTGTTGGA
-CCTTTGTTTT-

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCTTTTGTTGGA--
NNNTCCTTTGTTCTNNN

PB0122.1_Foxk1_2/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTTGTTGGA--
NNNTGTTGTTGTTNG