Information for motif41


Reverse Opposite:

p-value:1e-7
log p-value:-1.621e+01
Information Content per bp:1.530
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets243.7 +/- 167.1bp
Average Position of motif in Background624.7 +/- 257.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0129.1_Glis2_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TATTAAGACA--
AATATTAATAAAGA

PB0096.1_Zfp187_1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TATTAAGACA---
TTATTAGTACATAN

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TATTAAGACA---
ANNTTTTACGACNTNN

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TATTAAGACA---
NNGTTTTACGACTTTA

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TATTAAGACA---
NNNTTTTACGACNTTN

PH0076.1_Hoxd11/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TATTAAGACA---
ANNATTTTACGACNTNA

MA0151.1_ARID3A/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TATTAAGACA
-ATTAAA---

PB0135.1_Hoxa3_2/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------TATTAAGACA
AAAAACCATTAAGG--

PH0077.1_Hoxd12/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TATTAAGACA---
NNNATTTTACGACNNTN

PH0175.1_Vax2/Jaspar

Match Rank:10
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------TATTAAGACA
GTGCACTAATTAAGAC-