Information for motif42


Reverse Opposite:

p-value:1e-6
log p-value:-1.557e+01
Information Content per bp:1.916
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif15.9
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets463.2 +/- 335.2bp
Average Position of motif in Background662.1 +/- 386.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0157.1_Rhox11_1/Jaspar

Match Rank:1
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----TAACAGCG----
TCNNTTTACAGCGNNNT

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----TAACAGCG----
TCNCTTTACAGCGNNNT

PB0109.1_Bbx_2/Jaspar

Match Rank:3
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------TAACAGCG--
TGATTGTTAACAGTTGG

MA0111.1_Spz1/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TAACAGCG
AGGGTAACAGC-

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TAACAGCG----
GATATTGACAGCTGCGT

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TAACAGCG
---CAGCC

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TAACAGCG--
AAAAATAACAAACGG

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TAACAGCG
ATTAACACCT

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TAACAGCG--
BAACAGCTGT

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TAACAGCG-
-AACAGCTG