Information for motif44


Reverse Opposite:

p-value:1e-5
log p-value:-1.368e+01
Information Content per bp:1.830
Number of Target Sequences with motif116.0
Percentage of Target Sequences with motif4.64%
Number of Background Sequences with motif117.2
Percentage of Background Sequences with motif2.91%
Average Position of motif in Targets386.7 +/- 314.0bp
Average Position of motif in Background519.8 +/- 374.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0076.1_Hoxd11/Jaspar

Match Rank:1
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----TTGACGAC----
ANNATTTTACGACNTNA

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TTGACGAC----
ANNTTTTACGACNTNN

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TTGACGAC----
NNNTTTTACGACNTTN

PH0077.1_Hoxd12/Jaspar

Match Rank:4
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----TTGACGAC----
NNNATTTTACGACNNTN

PH0067.1_Hoxc12/Jaspar

Match Rank:5
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----TTGACGAC----
GNNNTTTTACGACCTNA

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----TTGACGAC----
NNGTTTTACGACTTTA

MA0018.2_CREB1/Jaspar

Match Rank:7
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TTGACGAC-
-TGACGTCA

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TTGACGAC
-TGACGT-

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTGACGAC----
ANATTTTACGAGNNNN

PB0179.1_Sp100_2/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTGACGAC---
NNTTTANNCGACGNA