Information for motif45


Reverse Opposite:

p-value:1e-5
log p-value:-1.295e+01
Information Content per bp:1.880
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif23.8
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets341.1 +/- 297.7bp
Average Position of motif in Background443.9 +/- 319.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0147.1_Max_2/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TCGCTTGT---
NNGTCGCGTGNCAC

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCGCTTGT
-TGCGTG-

PH0044.1_Homez/Jaspar

Match Rank:3
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------TCGCTTGT---
AAAACATCGTTTTTAAG

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCGCTTGT--
TTGCGTGCVA

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCGCTTGT
TGTCGGTT--

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TCGCTTGT-
GTTTCACTTCCG

MA0526.1_USF2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TCGCTTGT-
GGTCACATGAC

MA0051.1_IRF2/Jaspar

Match Rank:8
Score:0.58
Offset:-9
Orientation:reverse strand
Alignment:---------TCGCTTGT-
GTTTTGCTTTCACTTTCC

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TCGCTTGT
-NGCTN--

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TCGCTTGT-
GTCACGTGGT