Information for motif47


Reverse Opposite:

p-value:1e-5
log p-value:-1.221e+01
Information Content per bp:1.892
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif3.80%
Number of Background Sequences with motif94.1
Percentage of Background Sequences with motif2.34%
Average Position of motif in Targets390.8 +/- 285.4bp
Average Position of motif in Background489.2 +/- 375.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0164.1_Six4/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CGGACACC-----
ATAAATGACACCTATCA

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CGGACACC-----
NNGGCGACACCTCNNN

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGGACACC-
-TGACACCT

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGGACACC-
ACTGAAACCA

MA0028.1_ELK1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CGGACACC
GAGCCGGAAG--

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CGGACACC----
CTACTTGGATACGGAAT

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGGACACC----
--NNCACCTGNN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGGACACC-
CCAGACRSVB

PB0036.1_Irf6_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CGGACACC-----
CTGATCGAAACCAAAGT

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CGGACACC---
NNNNTTGGGCACNNCN