Information for motif5


Reverse Opposite:

p-value:1e-18
log p-value:-4.209e+01
Information Content per bp:1.915
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets542.0 +/- 413.0bp
Average Position of motif in Background403.0 +/- 291.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:STTGGCRTCT
-TTGGCA---

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----STTGGCRTCT-
NGTAGGTTGGCATNNN

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:STTGGCRTCT
CTTGGCAA--

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---STTGGCRTCT----
NNNNTTGGCGCCGANNN

PB0113.1_E2F3_2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---STTGGCRTCT----
NNNNTTGGCGCCGANNN

MA0018.2_CREB1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:STTGGCRTCT
--TGACGTCA

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:STTGGCRTCT
ATTTGCATAT

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:STTGGCRTCT
--TGACACCT

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:STTGGCRTCT
ATTTGCATAA

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--STTGGCRTCT----
GTATTGACAGCTNNTT