Information for motif54


Reverse Opposite:

p-value:1e-1
log p-value:-4.417e+00
Information Content per bp:1.966
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets238.8 +/- 237.7bp
Average Position of motif in Background313.0 +/- 380.9bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)2.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0009.1_E2F3_1/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GGACGCGC---
ATAAGGGCGCGCGAT

PB0008.1_E2F2_1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GGACGCGC---
ATAAAGGCGCGCGAT

PB0199.1_Zfp161_2/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GGACGCGC-------
-GCCGCGCAGTGCGT

PB0095.1_Zfp161_1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGACGCGC------
TGGCGCGCGCGCCTGA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGACGCGC
GGACGTGC

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGACGCGC
GGGTACGTGC

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GGACGCGC-
-TACGTGCV

MA0506.1_NRF1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GGACGCGC
TGCGCAGGCGC

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GGACGCGC-
-GGCGCGCT

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GGACGCGC--
GCGCATGCGCAG