Information for motif1


Reverse Opposite:

p-value:1e-29
log p-value:-6.811e+01
Information Content per bp:1.673
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif21.90%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif2.59%
Average Position of motif in Targets479.1 +/- 506.5bp
Average Position of motif in Background293.4 +/- 356.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TCATTCTTGA----
ACATTCATGACACG

PB0070.1_Sox30_1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TCATTCTTGA--
ANNTCCATTGTTCNNN

MA0087.1_Sox5/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TCATTCTTGA
--ATTGTTA-

PB0067.1_Sox18_1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCATTCTTGA----
TTCAATTGTTCTAAAA

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TCATTCTTGA
--ATTGTT--

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCATTCTTGA----
TAATTGTTCTAAAC

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TCATTCTTGA---
GACCACATTCATACAAT

PH0150.1_Pou4f3/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCATTCTTGA----
AGTTATTAATGAGGTC

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCATTCTTGA
GCATTCCAGN

PB0172.1_Sox1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TCATTCTTGA--
CTATAATTGTTAGCG