Information for motif15


Reverse Opposite:

p-value:1e-14
log p-value:-3.241e+01
Information Content per bp:1.678
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif15.71%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif3.12%
Average Position of motif in Targets426.7 +/- 428.8bp
Average Position of motif in Background241.2 +/- 100.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AGTAACAAGG---
NNNGTAACTANGNNA

PB0200.1_Zfp187_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGTAACAAGG----
NNAGGGACAAGGGCNC

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGTAACAAGG--
AAAAATAACAAACGG

MA0442.1_SOX10/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AGTAACAAGG
----ACAAAG

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGTAACAAGG-----
ATAAGAACAAAGGACTA

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGTAACAAGG-
-RNAACAATGG

PB0093.1_Zfp105_1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGTAACAAGG-
AACAAACAACAAGAG

MA0143.3_Sox2/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGTAACAAGG-
---AACAAAGG

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGTAACAAGG-----
AGAAGAACAAAGGACTA

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGTAACAAGG-
---RACAAWGG