Information for motif20


Reverse Opposite:

p-value:1e-13
log p-value:-3.146e+01
Information Content per bp:1.788
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif8.10%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets326.8 +/- 343.3bp
Average Position of motif in Background857.3 +/- 343.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGAGGCAAGG--
-AAGGCAAGTGT

MA0081.1_SPIB/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGAGGCAAGG
AGAGGAA---

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGAGGCAAGG
AGAGGAAGTG

MA0080.3_Spi1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGAGGCAAGG-
AAAAAGAGGAAGTGA

MA0474.1_Erg/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAGGCAAGG-
ACAGGAAGTGG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGCAAGG
TTGAGTGSTT---

MA0598.1_EHF/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGAGGCAAGG
-CAGGAAGG-

MA0467.1_Crx/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGAGGCAAGG
AAGAGGATTAG

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGAGGCAAGG---
AGGGGGCGGGGCTG

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGCAAGG
CTYRAGTGSY----