Information for motif21


Reverse Opposite:

p-value:1e-13
log p-value:-3.081e+01
Information Content per bp:1.768
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif13.81%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif2.82%
Average Position of motif in Targets404.3 +/- 306.8bp
Average Position of motif in Background489.1 +/- 210.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATAGGCTTTGTT-----
NNNTCCTTTGTTCTNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATAGGCTTTGTT-----
TNNTCCTTTGTTCTNNT

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:forward strand
Alignment:ATAGGCTTTGTT
-----CTTTGT-

MF0011.1_HMG_class/Jaspar

Match Rank:4
Score:0.60
Offset:6
Orientation:forward strand
Alignment:ATAGGCTTTGTT
------ATTGTT

MA0514.1_Sox3/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:ATAGGCTTTGTT--
----CCTTTGTTTT

PB0181.1_Spdef_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATAGGCTTTGTT-
CTACTAGGATGTNNTN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:ATAGGCTTTGTT--
----CCATTGTTNY

MA0084.1_SRY/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:ATAGGCTTTGTT---
------ATTGTTTAN

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:ATAGGCTTTGTT
----CCWTTGTY

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:ATAGGCTTTGTT--------
---NNCTTTGTTTTGNTNNN