Information for motif25


Reverse Opposite:

p-value:1e-12
log p-value:-2.893e+01
Information Content per bp:1.673
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif13.33%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif2.87%
Average Position of motif in Targets405.1 +/- 528.4bp
Average Position of motif in Background676.1 +/- 295.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0050.1_Osr1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CTGCTTCTGT----
TNNTGCTACTGTNNNN

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CTGCTTCTGT----
CNNNGCTACTGTANNN

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTGCTTCTGT
--GCTTCC--

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTGCTTCTGT---
AGATGCTRCTRCCHT

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTGCTTCTGT
AGCAGCTGCTNN

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTGCTTCTGT-
CCCCCTGCTGTG

MA0521.1_Tcf12/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTGCTTCTGT-
NNGCAGCTGTT

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTGCTTCTGT-
-RCCATMTGTT

MA0522.1_Tcf3/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTGCTTCTGT-
NTGCAGCTGTG

MA0500.1_Myog/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGCTTCTGT-
NNGCAGCTGTC