Information for motif27


Reverse Opposite:

p-value:1e-12
log p-value:-2.764e+01
Information Content per bp:1.514
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif11.43%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif1.92%
Average Position of motif in Targets340.1 +/- 311.0bp
Average Position of motif in Background182.9 +/- 159.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0174.1_Sox30_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ATTATATTCAGG
TAAGATTATAATACGG

PB0069.1_Sox21_1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATTATATTCAGG
TTTAATTATAATTAAG

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATTATATTCAGG
TATAATTATAATATTC

PB0064.1_Sox14_1/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATTATATTCAGG
GCTAATTATAATTATC

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ATTATATTCAGG-----
---ACATTCATGACACG

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATTATATTCAGG-
CCATTGTATGCAAAT

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ATTATATTCAGG----
GACCACATTCATACAAT

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------ATTATATTCAGG--
TTTTTTTTTTTTTTCAGGTT

MA0033.1_FOXL1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ATTATATTCAGG
--TATGTNTA--

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------ATTATATTCAGG--
TTTTTTTTTTTTTTCAGGTT