Information for motif28


Reverse Opposite:

p-value:1e-11
log p-value:-2.753e+01
Information Content per bp:1.676
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif20.48%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif6.07%
Average Position of motif in Targets496.1 +/- 514.8bp
Average Position of motif in Background537.9 +/- 453.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:ACTAGGMC-
-CTAGGCCT

PB0200.1_Zfp187_2/Jaspar

Match Rank:2
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------ACTAGGMC--
NNAGGGACAAGGGCNC

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:ACTAGGMC-
-CNAGGCCT

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ACTAGGMC-
NTCAAGGTCA

MA0072.1_RORA_2/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ACTAGGMC--
TATAAGTAGGTCAA

MA0071.1_RORA_1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ACTAGGMC-
ATCAAGGTCA

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACTAGGMC-
BTCAAGGTCA

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGGMC------
CTACTAGGATGTNNTN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ACTAGGMC-
---AGGTCA

MA0505.1_Nr5a2/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ACTAGGMC---
AAGTTCAAGGTCAGC