Information for motif3


Reverse Opposite:

p-value:1e-26
log p-value:-6.133e+01
Information Content per bp:1.776
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif12.86%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif1.10%
Average Position of motif in Targets497.6 +/- 450.6bp
Average Position of motif in Background448.8 +/- 248.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0504.1_NR2C2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGCTCAGAGG---
AGGGGTCAGAGGTCA

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGCTCAGAGG---
GAGGTCAAAGGTCA

MA0003.2_TFAP2A/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGCTCAGAGG-----
TGCCCTGAGGCANTN

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGCTCAGAGG---
NTGCCCANNGGTNA

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGCTCAGAGG---
TAGGGCAAAGGTCA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGCTCAGAGG---
GTAGGGCAAAGGTCA

MA0484.1_HNF4G/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGCTCAGAGG---
AGAGTCCAAAGTCCA

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGCTCAGAGG-
ATGCCCTGAGGC

PB0040.1_Lef1_1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGCTCAGAGG----
NANAGATCAAAGGGNNN

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGCTCAGAGG---
TGGGGCAAAGGTCA