Information for motif33


Reverse Opposite:

p-value:1e-10
log p-value:-2.375e+01
Information Content per bp:1.672
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif18.10%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif5.55%
Average Position of motif in Targets416.1 +/- 462.5bp
Average Position of motif in Background606.2 +/- 431.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AATGGCATTA
YTAATYNRATTA

PB0169.1_Sox15_2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AATGGCATTA--
TTGAATGAAATTCGA

Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCATTA
GTAATCDGATTA

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AATGGCATTA
-TTGGCA---

PH0121.1_Obox1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AATGGCATTA-----
TTAAGGGGATTAACTAC

MA0488.1_JUN/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AATGGCATTA----
-ATGACATCATCNN

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AATGGCATTA-
NGTAGGTTGGCATNNN

PH0126.1_Obox6/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATGGCATTA---
AAAAACGGATTATTG

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AATGGCATTA
--NGGGATTA

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AATGGCATTA-
-ATTGCATCAK