Information for motif34


Reverse Opposite:

p-value:1e-9
log p-value:-2.282e+01
Information Content per bp:1.611
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif8.57%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif1.60%
Average Position of motif in Targets361.9 +/- 367.3bp
Average Position of motif in Background238.6 +/- 95.7bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTTGCATTGTGT---
NNNCCATTGTGTNAN

MA0078.1_Sox17/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTTGCATTGTGT
--CTCATTGTC-

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TTTGCATTGTGT
----CTTTGT--

MA0507.1_POU2F2/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TTTGCATTGTGT
TTCATTTGCATAT---

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTTGCATTGTGT----
ANTCCTTTGTCTNNNN

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTTGCATTGTGT
ATTTGCATAA---

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTTGCATTGTGT
ATTTGCATAT---

MA0515.1_Sox6/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TTTGCATTGTGT-
---CCATTGTTTT

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTTGCATTGTGT
ATTTTCCATT----

MA0084.1_SRY/Jaspar

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TTTGCATTGTGT--
-----ATTGTTTAN